Activités de recherche, techniques: 

Au sein de l’UMR Agroécologie, mon équipe développe un large éventail d’approches visant à mieux comprendre le fonctionnement de la symbiose mycorhizienne à arbsucules (MA) sur le plan fondamental. D’un point de vue appliqué, nous travaillons sur la valorisation des services écosystémiques rendus par ces champignons dans le cadre d’une agriculture à bas niveaux d’intrants de synthèses. Nous développons des recherches dont l'objectif est de générer les connaissances nécessaires à la mise en place de nouveaux outils de management en production végétale tels que l'exploitation des interactions plantes/microorganismes bénéfiques du sol et la stimulation des mécanismes de défense des plantes. Nos projets sont basés sur l'utilisation de systèmes modelés tout en étant tournés vers des plantes d'intérêt agronomique (vigne, pomme de terre, fraise,...) au niveau de leur agroécosystème (du gène au champ). La maitrise optimale des champignons MA en ingénierie écologique des systèmes de production végétale nécessite la compréhension des mécanismes complexes qui sous-tendent l'établissement et le fonctionnement des interactions durables entre les deux partenaires. Ainsi, les activités de recherche que nous développons ont pour objectifs principaux  (i) d’identifier, par les études de génomique fonctionnelle, les évènements cellulaires régissant la mise en place et le fonctionnement de la symbiose MA, (ii) de caractériser au niveau moléculaire les Gloméromycéte et leur programme symbiotique, (iii) d’exploiter les données moléculaires dans des applications biotechnologiques de la symbiose MA, et (iv) de déterminer la réponse des fonctions symbiotiques aux perturbations anthropiques.

Activités d’enseignement :

Depuis mon arrivée à l’Université de Bourgogne, j’ai initié et monté, avec mes collègues, les parcours de M1 et M2 Biologie Intégrative des Interactions Plantes Microorganismes. J’ai porté le M1 et le M2 de 2009 à 2014. Après avoir passé le relais pour le portage, je suis resté impliqué et participe notamment au comité de pilotage de ces parcours. Je me suis également intégré aux enseignements déjà présents au sein des maquettes allant du L1 au M2 en biologie et physiologie végétale. Depuis le 01 septembre 2022 je suis responsable de la deuxième année du Master B2IPME. J’ai également développé des enseignements (TP, TD et CM) proches de mes thèmes de recherches dans différents Masters à l’Université de Bourgogne ou dans d’autres Universités/Ecoles d’Ingénieurs

Publications :

1.         Buscot F., D. Wipf, C. Di Battista, J.C. Munch, B. Botton and F. Martin (1996). DNA polymorphism in morels: PCR/RFLP analysis of the ribosomal DNA spacers and microsatellite-primed PCR. Mycological Research 100, 63-71
2.         Wipf D., J.P. Bedell, J.C. Munch, B. Botton and F. Buscot (1996). Polymorphism in Morels: Isozyme Electrophoretic Analysis. Canadian Journal of Microbiology 42, 819-827
3.         Wipf D., J.C. Munch, B. Botton and F. Buscot (1996). DNA polymorphism in morels: Complete sequences of the Internal Transcribed Spacer of Genes Coding for rRNA in Morchella esculenta (yellow morel) and Morchella conica (black morel). Applied and Environmental Microbiology 62, 3541-3543
4.         Wipf D., S. Koschinsky, P. Clowez, J.C. Munch, B. Botton and F. Buscot (1997). Recent advances in ecology and systematics of morels. Cryptogamie Mycologie 18, 95-109
5.         Chillali M., D. Wipf, J.J. Guillaumin, C. Mohammed and B. Botton (1998). Delineation of the European Armillaria species based on the sequences of the Internal Transcribed Spacer (ITS) of ribosomal DNA. The New Phytologist 138, 553-561
6.         Wipf D., A. Fribourg, B. Botton and F., Buscot (1999). Diversity of the Internal Transcribed Spacer of rDNA. Canadian Journal of Microbiology 45 (9), 769-778
7.         Wipf D., U. Ludewig, M. Tegeder, D. Rentsch, W. Koch and W.B. Frommer (2002).  Conservation of amino acid transporters in fungi, plants and animals. Trends in Biochemical Sciences 27, 139-147
8.         Chalot M., A. Javelle, D. Blaudez, R. Lambillote, R. Cooke, H. Sentenac, D. Wipf and B. Botton (2002). An update on transport processes in ectomycorrhizas. Plant and Soil (244, 165-175
9.         Wipf D., M. Benjdia, M. Tegeder and W.B. Frommer (2002). Characterization of a general amino acid permease from Hebeloma cylindrosporum. FEBS Letters 528, 119-124
10.       Catoni E., M. Desimone, M. Hilpert, D. Wipf, R. Kunze, A. Schneider, U. I. Flugge, K. Schumacher and W. B. Frommer (2002). Expression pattern of a nuclear encoded mitochondrial arginine-ornithine translocator gene from Arabidopsis. BMC Plant Biology 3 :1
11.       Wipf D., M. Benjdia, E. Rikirsch, S. Zimmermann, M. Tegeder and W.B. Frommer (2003). An expression cDNA library for suppression cloning in yeast mutants, complementation of a yeast his4 mutant and EST analysis from the symbiotic basidiomycete Hebeloma cylindrosporum. Genome 46, 177-181
12.       Lalonde S., D. Wipf and W.B. Frommer. (2004). Transport mechanisms for carbon and nitrogen between source and sink. Annual Review of Plant Biology 55, 341-371
13.       Benjdia M., E. Rikirsch, T. Müller, M. Morel, S. Zimmermann, M. Chalot, W.B. Frommer and D. Wipf (2006). Peptide uptake in the ectomycorrhizal fungus Hebeloma cylindrosporum: Characterization of two di- and tripeptide transporters (HcPTR2A and B). The New Phytologist 170, 401-410
14.       Schaaf G., A. Honsbeina, A.R. Meda, S. Kirschner, D. Wipf and N. von Wirén (2006). AtIREG2 encodes a tonoplast transport protein involved in iron-dependent nickel detoxification in Arabidopsis thaliana roots. Journal of Biological Chemistry 281, 25532-25540
15.       Schüssler A., H. Martin, Cohen D., M. Fitz, and D. Wipf (2006). Characterization of the first carbohydrate transporter from symbiotic glomeromycotan fungi. Nature 444, 933-936
16.       Müller T., M. Benjdia, M. Avolio, B. Voigt, D. Menzel, A. Pardo, W.B. Frommer and D. Wipf (2006). Functional expression of the green fluorescent protein in the ectomycorrhizal model fungus Hebeloma cylindrosporum. Mycorrhiza 16, 437-442
17.       Küster H., N. Hohnjec, A. Becker, C. Firnhaber, K. Manthey, A. M. Perlick, T. Bekel, K. Henckel, M. Dondrup, A. Goesmann, F. Meyer, D. Wipf, N. Requena, H. Bothe, R. Hampp, U. Nehls, F. Krajinski, P. Franken, A. Pühler. (2007) Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome in mycorrhizal symbioses. Phytochemistry 68, 19-32
18.       Müller T., Avolio M., Olivi M., Benjdia M., Rikirsch E., Kasaras A., Fitz M., Chalot M. and Wipf D. (2007) Nitrogen transport in the ectomycorrhiza on the basis of the Hebeloma cylindrosporum-Pinus pinaster association. Phytochemistry 68, 41-51
19.       Schüssler A., H. Martin, Cohen D., M. Fitz, and D. Wipf (2007). Arbuscular mycorrhiza - the first glomeromycotan sugar transporter is isolated and characterized. Plant Signaling and Behaviour 2, 314-317
20.       Morel M., C. Jacob, M. Fitz, D. Wipf, M. Chalot and A. Brun (2008). Characterization and regulation of PiDUR3, a permease involved in the acquisition of urea by the ectomycorrhizal fungus Paxillus involutus. Fungal Genetics and Biology 45, 912-921
21.       Cappellazzo G., L. Lanfranco, M. Fitz, D. Wipf and P. Bonfante (2008). Characterization of an amino acid permease from the endomycorrhizal fungus Glomus mosseae. Plant Physiology 147, 429-437
22.       Couturier J. E. de Fay, M. Fitz, D. Wipf, D. Blaudez and M. Chalot (2010). PtAAP11, a high affinity amino acid transporter specifically expressed in differentiating xylem cells of poplar. Journal of Experimental Botany 61, 1671-1682
23.       Morton J., E. Grace and D. Wipf (2010). Perspectives on ICOM 6 « Beyond the roots ». Mycorrhiza 20, 289-291
24.       Couturier J., J. Doidy, F. Guinet, D. Wipf, D. Blaudez and M. Chalot (2010). Glutamine, arginine and the amino acid transporter Pt-CAT11 play important roles during senescence in poplar. Annals of Botany 105, 1159-1169 
25.       Gianinazzi S., A. Gollotte, M.N. Binet, D. van Tuinen, D. Redecker and D. Wipf (2010). Agroecology: the key role of arbuscular mycorrhizas in ecosystem services. Mycorrhiza 20, 519-530
26.       Banks J.A., …, D. Wipf, P.G. Wolf, L. Yang, A.D. Zimmer, Q. Zhu, T. Mitros, U. Hellsten, D. Loqué, R. Otillar, A. Salamov, J. Schmutz, H. Shapiro, E. Lindquist, S. Lucas, D. Rokhsar and I. Grigoriev (2011). The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants. Science 332 : 960-963.
27.       Guether M., V. Volpe, R. Balestrini, N. Requena, D. Wipf and P. Bonfante (2011). LjLHT1.2 - a mycorrhiza-inducible plant amino acid transporter from Lotus japonicus. Biology and Fertility of Soils 47 : 925-936
28.       Avolio M., T. Müller, A. Mpangara, C. Lange, B. Becker, A. Pauck, A. Kirsch, M. Fitz and D. Wipf (2012). Regulation of genes involved in nitrogen uptake and metabolism by different C/N ratios and nitrogen sources in the model ectomycorrhizal fungus Hebeloma cylindrosporum. Mycorrhiza 22(7) : 515-24
29.       Wipf D., D. Loqué, S. Lalonde and F. Frommer (2012). Amino acid transporter inventory of the Selaginella genome. Frontiers in Plant Evolution and Development 3:36. doi: 10.3389/fpls.2012.00036. Epub 2012
30.       Doidy J., Grace E., C. Kühn, F. Simon-Plas, L. Casieri and D. Wipf (2012). Sugar transporters in plants and in their interactions with fungi. Trends in Plant Science 17 (7), 413-422
31.       Casieri L., K. Gallardo and D. Wipf (2012). Transcriptional response of Medicago truncatula sulphate transporters to arbuscular mycorrhizal symbiosis with and without sulphur stress. Planta 235(6) : 1431-1447
32.       Splivallo R., R. Rittersma, N. Valdez, G. Chevalier, V. Molinier, D. Wipf and P. Karlovsky (2012). Is climate change altering the geographical distribution of truffles? Frontiers in Ecology and the Environment 10: 461–462
33.       Doidy J., D. van Tuinen, O. Lamotte, M. Corneillat, G. Alcaraz and D. Wipf (2012). The Medicago truncatula sucrose transporter family. Characterization and implication of key members in carbon partitioning towards arbuscular mycorrhizal fungi. Molecular Plant 5 (6) : 1346-58
34.       Liu Y., Gianinazzi-Pearson V., Arnould C., Wipf D., Zhao B. and D. van Tuinen (2013) Fungal genes related to calcium homeostasis and signalling are up-regulated in symbiotic arbuscular mycorrhiza interactions. Fungal Biology 117(1) : 22-31
35.       Molinier V., C. Murat, E. Morin, A. Gollotte, D. Wipf and F. Martin (2013). First identification of polymorphic microsatellite markers in the Burgundy truffle, Tuber aestivum Vittad., using direct shotgun pyrosequencing. Applications in Plant Sciences 1(2) : 1200220
36.       Koegel S., N. Ait Lahmidi, C. Arnould, O. Chatagnier, F. Walder, K. Ineichen, T. Boller, D. Wipf, A. Wiemken and P.E. Courty (2013) The Family of Ammonium Transporters (AMT) in Sorghum bicolor: Two AMTs are induced locally, but not systemically in roots colonized by arbuscular mycorrhizal fungi.  The New Phytologist 198(3) : 853-865
37.       Casieri L., N. Ait Lahmidi, J. Doidy, C. Fourrey, A. Migeon, L. Bonneau, P.E. Courty, K. Garcia, M. Charbonnier, A. Delteil, A. Brun, S. Zimmermann, C. Plassard and D. Wipf (2013) Biotrophic transportome in mutualistic plant-fungal interactions. Mycorrhiza 23 : 597-625
38.       Bonneau L., S. Huguet, D. Wipf, N. Pauly and H.N. Truong (2013) Combined phosphate and nitrogen limitation generates a nutrient stress transcriptome favorable for arbuscular mycorrhizal symbiosis in Medicago truncatula. The New Phytologist 199 : 188-202
39.       Rebollo C.M.S., Lovato P.E., Wipf D. and Dumas-Gaudot E. (2013). Proteomic studies of arbuscular mycorrhizal associations. Advances in Biological Chemistry 3 (1): 48-58
40.       Binet M.N., L. Sage, C. Malan, J.C. Clément, D. Redecker, D. Wipf, R. Geremia, S. Lavorel and B. Mouhamadou (2013) Effects of mowing on fungal endophytes and arbuscular mycorrhizal fungi in subalpine grasslands. Fungal Ecology 6 : 248-255
41.       Recorbet G., C. Abdallah, J. Renaut, D. Wipf and E. Dumas-Gaudot (2013) Protein actors sustaining arbuscular mycorrhizal symbiosis: Underground artists break the silence. The New Phytologist 199 : 26-40
42.       Molinier V., D. van Tuinen, Chevalier G., Gollotte A., Wipf D. and D. Redecker (2013) A multigene phylogeny demonstrates that Tuber aestivum and Tuber uncinatum are conspecific. Organisms Diversity and Evolution 13, 503-512
43.       Molinier V., Bouffaud M.L, Castel T., Mounier A., Colombet A., Recorbet G., Frochot H., and D. Wipf (2013) Monitoring the fate of a 30-year-old truffle orchard in Burgundy: from Tuber melanosporum to Tuber aestivum. Agroforestry systems 87, 1439-1449
44.       Zuber H., Poignavent G., Le Signor C., Aimé D., Vieren E., Tadla C., Lugan R., Belghazi M., Labas V., Santoni, A.L., Wipf D., Buitink J., Avice J.C., Salon C., and K. Gallardo (2013) Legume adaptation to sulfur deficiency revealed by comparing nutrient allocation and seed traits in Medicago truncatula. The Plant Journal 76(6) : 982-996
45.       Negrel J., F. Javelle and D. Wipf (2014) Detection of an O-methyltransferase synthesising acetosyringone in methyl jasmonate-treated tobacco cell-suspensions cultures. Phytochemistry 99 : 52-60
46.       Abdallah C., B. Valot, C. Guillier, A. Mounier, T. Balliau, M. Zivy, D. van Tuinen, J. Renaut, D. Wipf, E. Dumas-Gaudot and G. Recorbet (2014) The membrane proteome of Medicago truncatula roots displays qualitative and quantitative changes in response to arbuscular mycorrhizal symbiosis. Journal of Proteomics 108 : 354-368, doi : 10.1016/j.jprot.2014.05.028
47.       Gallardo K., Courty P.E., Le Signor C., Wipf D. and V. Vernoud (2014) Sulfate transporters in the plant’s response to drought and salinity: regulation and possible functions. Frontiers in Plant Science 29 ; 5 : 580, doi : 10.3389/fpls.2014.00580
48.       Wipf D., Mongelard D., van Tuinen D., Gutierrez L. and L. Casieri (2014) Transcriptional responses of Medicago truncatula upon sulfur deficiency stress and arbuscular mycorrhizal symbiosis. Frontiers in Plant Science 30, 5, 680, doi : 10.3389/fpls.2014.00680.
49.       Lemanceau P., Maron P.A., Mougel C., Philippot L., Pivato B., Plassart P., Ranjard L., Revellin C., Tardy V. and D. Wipf (2015). Understanding and managing soil biodiversity:  a major challenge in agroecology. Agronomy for Sustainable Development 35, 67-81, DOI 10.1007/s13593-014-0247-0
50.       Courty P.E., Smith P., Koegel S., Redecker D. and D. Wipf (2015) Inorganic Nitrogen uptake and transport in beneficial plant root-microbe interactions. Critical Reviews in Plant Sciences 34, Issue 1-3, 4-16, doi : 10.1080/07352689.2014.897897
51.       Molinier V., Murat C., Frochot H., Wipf D. and R. Splivallo (2015) Fine-scale spatial genetic structure analysis of the black truffle Tuber aestivum and its link to aroma variability. Environmental Microbiology doi : 10.1111/1462-2920.12910
52.       Molinier V., Murat C., Peter M., Gollotte A., De la Varga H., Meier B., Egli S., Belfiori B., Paolocci F. and D. Wipf (2015) SSR- based identification of genetic groups within European populations of Tuber aestivum Vittad. Mycorrhiza doi : 10.1007/s00572-015-0649-0
53.       Hafidi M., Qaddoury A., Duponnois R., Wipf D., Hijri M. and A. Bâ (2015) International Congress on Mycorrhizae: mycorrhizal symbiosis a key factor for improving plant productivity and ecosystems restoration. Mycorrhiza doi : 10.1007/s00572-015-0637-4
54.       Trouvelot S., Bonneau L., Redecker D., van Tuinen D., Adrian M. and D. Wipf (2015) Arbuscular mycorrhiza symbiosis in viticulture. A review. Agronomy for Sustainable Development doi : 10.1007/s13593-015-0329-7
55.       Jeandroz S., D. Wipf, D. Stuehr, L. Lamattina, M. Melkonian, Z. Tian, Y. Zhu, E. J. Carpenter, G. K.-S. Wong and D. Wendehenne (2016) Occurrence, structure, and evolution of Nitric Oxide Synthase–like proteins in the plant kingdom. Science Signaling 9(417) : re2-re2, doi : 10.1126/scisignal.aad4403
56.       Peyret-Guzzon M., Stockinger H., Bouffaud M.-L., Farcy P., Wipf D.  and D. Redecker (2016) Arbuscular mycorrhizal fungal communities and Rhizophagus irregularis populations shift in response to short-term ploughing and fertilisation in a buffer strip. Mycorrhiza 26 : 33-46, doi : 10.1007/s00572-015-0644-5
57.       Bouffaud M.L., E. Bernaud, A. Colombet, D. van Tuinen, D. Wipf and D. Redecker (2016). Regional-scale analysis of arbuscular mycorrhizal fungi: the case of Burgundy vineyards. Journal International des sciences de la vigne et du vin 49(4), 275-291
58.       Calabrese S., J. Pérez-Tienda, M. Ellerbeck, C. Arnould, O. Chatagnier, T. Boller, A. Schüßler, A. Brachmann, D. Wipf, N. Ferrol and P.E. Courty (2016). GintAMT3 – a low-affinity ammonium transporter of the arbuscular mycorrhizal Rhizophagus irregularis. Frontiers in Plant Science doi : 10.3389/fpls.2016.00679
59.       Wipf D. and P.E. Courty (2016). The nutritional transportome in plant-microbe interactions, next stop please. Frontiers in Plant Science doi : 10.3389/fpls.2016.00809
60.       Jeudy C., M. Adrian, C. Baussart, C. Bernard, E. Bernaud, V. Bourion, H. Busset, L. Cabrera, F. Cointault, S. Han, M. Lamboeuf, D. Moreau, B. Pivato, M. Prudent, S. Trouvelot, H.N. Truong, V. Vernoud, A.S. Voisin, D. Wipf, and C. Salon (2016). RhizoTubes as a new tool for high throughput imaging of plant root development and architecture: test, comparison with pot grown plants and validation. Plant Methods 12, 31. doi : 10.1186/s13007-016-0131-9
61.       Ait Lahmidi N., P.E. Courty, D. Brulé, O. Chatagnier, C. Arnould, J. Doidy, G. Berta, G. Lingua, D. Wipf and L. Bonneau (2016). Sugar Exchanges in Arbuscular Mycorrhiza: RiMST5 and RiMST6, two Novel Rhizophagus irregularis Monosaccharide Transporters, Are Involved in Both Sugar Uptake from the Soil and from the Plant Partner. Plant Physiology and Biochemistry 107, 354–363
62.       Garcia K., J. Doidy, S. Zimmermann, D. Wipf and P.E. Courty (2016). Take a trip through the plant and fungal transportome of mycorrhiza. Trends in Plant Science 21(11) :937-950
63.       Bouffaud M.L., Creamer R.E., Stone D., Plassart P., van Tuinen D., Lemanceau P., Wipf D. and D. Redecker (2016). Indicator species and co-occurrence in communities of arbuscular mycorrhizal fungal communities at the European scale. Soil Biology & Biochemistry 103, 464–470
64.       Bouffaud M.L., Bragalini C., Berruti A., Peyret-Guzzon M., Voyron, S., Stockinger H., van Tuinen D., Lumini E, Wipf D., Plassart P., Lemanceau P., Bianciotto C., Redecker D. and M. Girlanda (2016). Arbuscular mycorrhizal fungal community differences among European Long-Term Observatories. Mycorrhiza 27(4), 331-343. doi :10.1007/s00572-016-0753-9
65.       Daher Z., G. Recorbet, K. Solymosi, S. Wienkoop, A. Mounier, D. Morandi, J. Lherminier, D. Wipf, E. Dumas-Gaudot and B. Schoefs (2016). Changes in plastid proteome and structure in arbuscular mycorrhizal roots display a nutrient starvation signature. Physiologia plantarum 159, 13-29
66.       Hao Z., van Tuinen D., Wipf D., Fayolle L., Chataignier O., Li X., Chen B., Gianinazzi S., Gianinazzi-Pearson V.P. and M. Adrian (2017) Biocontrol of grapevine aerial and root pathogens byPaenibacillus sp. strain B2 and paenimyxin in vitro and in planta. Biological control 109, 42-50
67.       Koegel S., Mieulet D., Baday B., Chatagnier O., Lehmann M.F., Wiemken A., Boller T., Wipf D., Bernèche S., Guiderdoni E. and P.E. Courty (2017) Phylogenetic, structural, and functional characterization of AMT3;1, an ammonium transporter induced by mycorrhization among model grasses. Mycorrhiza 27(7):695-708. DOI 10.1007/s00572-017-0786-8
68.       Pfister C., Bourque S., Chatagnier O., Chiltz A., Fromentin J., van Tuinen D., Wipf D. and N. Leborgne-Castel (2017) Differential signaling and sugar exchanges in response to avirulent pathogen- and symbiont- derived molecules in tobacco cells. Frontiers in Microbiology DOI: 10.3389/fmicb.2017.02228
69.       Aloui A., Recorbet G., Lemaître-Guillier C., Mounier A., Balliau T., Zivy M, Wipf D. and E. Dumas-Gaudot (2018) The plasma membrane proteome of Medicago truncatula roots as modified by arbuscular mycorrhizal symbiosis. Mycorrhiza 28(1):1-16. doi: 10.1007/s00572-017-0789-5
70.       Murat C., Payen T., Noel B., Kuo A., Morin E., …, Wipf D., …  and F.M. Martin (2018) Genomes of Pezizomycetes reveal molecular basis of Tuberaceae lifestyle. Nature Ecology and Evolution 2, 1956–1965
71.       Todeschini V., Ait Lahmidi N., Mazzucco E., Marsano F., Gosetti F., Robotti E., Bona E., Massa N., Bonneau L., Marengo E., Wipf D., Berta B. and G. Lingua (2018) Impact of beneficial microorganisms on strawberry growth, fruit production, nutritional quality and volatilome. Frontiers in Plant Science https://doi.org/10.3389/fpls.2018.01611
72.       Wipf D, Krajinski F., van Tuinen D., Recorbet G. and P.E. Courty (2019) Trading on the arbuscular mycorrhiza market: from arbuscules to common mycorrhizal network. The New Phytologist https://doi.org/10.1111/nph.15775, 223(3), 1127-1142, Tansley review
73.       Essiane-Ondo O, J Zerbib, S Gianinazzi and D. Wipf (2019) Wheat landraces with low mycorrhizing ability respond differently to inoculation in the field with artificial or indigenous arbuscular mycorrhizal fungal communities. Symbiosis 78(3), 229-240 https://doi.org/10.1007/s13199-019-00612-8
74.       Calabrese S, Cusant L, Sarazin A, Niehl A, Erban A, Brul& D, Recorbet G, Wipf D, Roux C, Kopka J, Boller T, Courty PE (2019) Imbalanced regulation of fungal nutrient transports according to phosphate availability in a symbiocosm formed by poplar, sorghum and Rhizophagus irregularis. Frontiers in Plant Science 10: 1617. doi: 10.3389/fpls.2019.01617
75.       van Tuinen D., E. Tranchand, F. Hirissou, D. Wipf, and P.E. Courty (2020) Carbon partitioning in a walnut-maize agroforestry system through arbuscular mycorrhizal fungi. 15, 100230 Rhizosphere 15: DOI: 10.1016/j.rhisph.2020.100230
76.       Idder Ighili H, A Agustian, MA Idder, JJ Guillaumin, D Wipf, B Botton (2020) Production of -Glucosidases by European Armillaria species. 50, e12624 Forest Pathology (DOI:10.1111/efp.12624
77.       Müller T, B Neuhäuser, U Ludewig, G Houdinet, SD Zimmermann, PE Courty, D Wipf (2020) New insights into HcPTR2A and HcPTR2B, two high-affinity peptide transporters from the ectomycorrhizal model fungus Hebeloma cylindrosporum. Mycorrhiza, 30, 735-747 doi.org/10.1007/s00572-020-00983-7
78.       Wipf D, C Pfister, A Mounier, N Leborgne-Castel, WB Frommer, and PE Courty (2021) Identification of Putative Interactors of Arabidopsis Sugar Transporters. Trends in Plant Science, 26(1), 13-22 https://doi.org/10.1016/j.tplants.2020.09.009
79.       Recorbet G, S Calabrese, T Balliau, M Zivy, D Wipf, T Boller and PE Courty (2021) Proteome adaptations under contrasting soil phosphate regimes of Rhizophagus irregularis engaged in a common mycorrhizal network. Fungal Genetics and Biology, 147, https://doi.org/10.1016/j.fgb.2021.103517
80.       León M, M Berbegal, P Abad-Campos, A Ramón-Albalat, T Caffi, V Rossi, G Hasanaliyeva, PA Noceto, D Wipf, S Širca, J Razinger, AL Fragnière, P Kehrli, A Ranca, A Petrescu, J Armengol (2021) Evaluation of Sown Cover Crops and Spontaneous Weed Flora as a Potential Reservoir of Black-Foot Pathogens in Organic Viticulture. Biology 10, 498, https://doi.org/10.3390/biology10060498
81.       Sportes A, M Hériché, R Boussageon, PA Noceto, D van Tuinen, D Wipf and PE Courty (2021) A historical perspective on mycorrhizal mutualism emphasizing arbuscular mycorrhizas and their emerging challenges. Mycorrhiza, https://doi.org/10.1007/s00572-021-01053-2
82.       Noceto PA, P Bettenfeld, R Boussageon, M Hériché, A Sportes, D van Tuinen, PE Courty and D Wipf (2021) Arbuscular mycorrhizal fungi, a key symbiosis in the development of quality traits in crop production, alone or combined with Plant Growth Promoting Bacteria. Mycorrhiza, https://doi.org/10.1007/s00572-021-01054-1
83.       García-Soto I, R Boussageon, YM Cruz-Farfán, JD Castro-Chilpa, LX Hernández-Cerezo, V Bustos-Zagal, A Leija-Salas, G Hernández, M Torres, D Formey, PE Courty, D Wipf, M Serrano, A Tromas (2021) The Lotus japonicus ROP3 is involved in the establishment of the nitrogen-fixing symbiosis but not of the arbuscular mycorrhizal symbiosis. Frontiers Plant Science, https://doi.org/10.3389/fpls.2021.696450
84.       Hériché M., Arnould C., Wipf D., Courty P.-E. (2022) Imaging plant tissues: advances and promising clearing practices. Trends in Plant Science, 27(6):601-615. doi: 10.1016/j.tplants.2021.12.006
85.       Hériché M, C Arnould, D Wipf, PE Courty (2022) New clearing protocol for tannic roots optical imaging. Trends in Plant Science, 27(6):616-617 https://doi.org/10.1016/j.tplants.2021.08.015
86.       Hsouna J, Gritli T, Ilahi H, Ellouze W, Mansouri M, Chihaoui SA, Bouhnik O, Missbah El Idrissi M, Abdelmoumen H, Wipf D, Courty PE, Bekki A, Tambong JT, Mnasri B (2022) Genotypic and symbiotic diversity studies of rhizobia nodulating Acacia saligna in Tunisia reveal two novel symbiovars within the Rhizobium leguminosarum complex and Bradyrhizobium. Systematic and Applied Microbiology, 45, 126343
87.       Jacquiod S, T Raynaud, E Pimet, C Ducourtieux, L Casieri, D Wipf, M Blouin (2022) Wheat Rhizosphere Microbiota Respond to Changes in Plant Genotype, Chemical Inputs, and Plant Phenotypic Plasticity. Frontiers in Ecology and Evolution, 10, https://doi.org/10.3389/fevo.2022.903008
88.       Ranca A, AL Fragniere, SA Ene, S Modic, V Rossi, T Caffi, J Razinger, E Rodrigo Santamalia, D Wipf, P Kehrli (2022) Potential of Cover Crops to Control Arthropod Pests in Organic Viticulture. Bulletin of University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca. Horticulture, 79, 41-46
89.       Boussageon R, Marro N, Martina J, Brulé D, Wipf D, PE Courty (2022) The fine-tuning of mycorrhizal pathway in Sorghum depends on both nitrogen-phosphorus availability and the identity of the fungal partner. Plant, Cell & Environment, 45(11):3354-3366, DOI: 10.1111/pce.14426
90.       Sebastiana M, Serrazina S, Monteiro F, Wipf D, Fromentin J, Teixeira R, Malhó R, Courty P-E. (2022) Nitrogen Acquisition and Transport in the Ectomycorrhizal Symbiosis—Insights from the Interaction between an Oak Tree and Pisolithus tinctorius. Plants, 12(1):10. https://doi.org/10.3390/plants12010010
91.       Boussageon R, van Tuinen D, Lapadatescu C, Trépanier M, Vermesch E, Wipf D, Courty PE (2023) Effects of field inoculation of potato tubers with the arbuscular mycorrhizal fungus Rhizophagus irregularis DAOM 197198 are cultivar dependent. Symbiosis, 89, 213–226 https://doi.org/10.1007/s13199-023-00908-w
92.       Boussageon R, Sportes A, Lemaitre JP, van Tuinen D, Lapadatescu C, Trépanier M, Vermesch E, Wipf D, Courty PE (2023). A bacillaceae consortium positively impacts arbuscular mycorrhizal fungus colonisation, plant phosphate nutrition, and tuber yield in Solanum tuberosum cv. Jazzy. Symbiosis, 89, 235–250. https://doi.org/10.1007/s13199-023-00904-0
93.       Hsouna J, Ilahi; H, Han JC, Gritli T, Ellouze W, Zhang XX, Mansouri M; Rahi P, Missbah El Idrissi M, Lamrabet M, Oubla M, Courty PE, Wipf D, Tambong JT, Mnasri B (2023) Rhizobium acaciae sp. nov., a new nitrogen fixing symbiovar isolated from root-nodules of Acacia saligna in Tunisia. International Journal of Systematic and Evolutionary Microbiology, May 73(5) https://doi.org/10.1099/ijsem.0.005900
94.       Gritli T, Ellouze W, Wu H, Taamali W, Fu W, Alfeddy MN, Ouahmane L, Courty PE, Wipf D, Missbah El Idrissi M, Chen B, B Mnasri (2023) Molecular characterization of arbuscular mycorrhizal communities associated with the roots and rhizosphere soil of Lathyrus cicera L. grown in soils from sub-humid agroecosystems of northern Tunisia. Symbiosis, 90, 81–90 https://doi.org/10.1007/s13199-023-00922-y
95.       Noceto PA, Durney C, van Tuinen D, de Sousa J, Wipf D, Courty PE (2023) Arbuscular mycorrhizal fungal communities differ in neighbouring vineyards of different ages and weed managements. Mycorrhiza, doi: 10.1007/s00572-023-01117-5.
96.       Sportes A, Hériché M, Mounier A, Durney C, van Tuinen D, Trouvelot S, Wipf D and Courty PE (2023) Comparative RNA sequencing-based transcriptome profiling of ten grapevine rootstocks: shared and specific sets of genes respond to mycorrhizal symbiosis.  Mycorrhiza, accepté
97.       Madjoub N, C Durney, A Sportes, PA Noceto, D Wipf, PE Courty, B Abdelkader (2023) Arbuscular mycorrhizal fungi participate to the restoration of a gypsum mining site in western Algeria. Symbiosis, accepté

Principaux contrats :

 5 dernières années :

• Projet FEADER La truffe de Bourgogne, un produit de qualité à forte valeur aJOUtée (BIJOU). Ce projet regroupe des trufficulteurs professionnels, notre laboratoire et d’autres acteurs du monde socio-économiques

Durée :  2017-2021

•  « Work Package leader » du projet Européen Core Organic Cofund Biovine.

Durée :  2018-2021

• Projet « Augmenter la santé des plantes au vignoble grâce à la gestion des champignons mycorhiziens » Conseil Régional de Bourgogne Franche Comté

Durée :  2018-2021

• Participant du Projet « HOLOVITI » Plan National Dépérissement de la Vigne, Pôrté par P.E. Courty) et S. Trouvelot Durée :  2018-2021
• Porteur du Projet « MicroImput » soil MICROrganisms service providers IMprove plant Phosphate nUTrition, Entreprise PremierTech, ANRT

Durée :  2019-2022

• Projet Plant2Pro MOMA « Comprendre et exploiter l’utilisation de l’azote fourni par les microorganismes telluriques pour une production de maïs durable

Durée :  2019-2021

• Participant du Projet « Aptitude » Plan National Dépérissement de la Vigne, Pôrté par P.E. Courty et S. Trouvelot  Bureau Interprofessionel des Vins de Bourgogne et Région Bourgogne Franche Comté

Durée :  2019-2022

• Projet « Identification de marqueurs fonctionnels de l’efficacité de la mycorhize au champ ». Dispositif Itinériare Chercheur Entrepreneur du Conseil Régional de Bourgogne Franche Comté

Durée :  2019-2023

• Participant (Porteur PE Courty) du projet Plant2Pro « Identification, chez le pois, de marqueurs représentatifs d’une efficacité symbiotique racinaire optimale pour une production stable » (SymbioPea)

Durée :  2021-2023

• Porteur du Projet Hubert Curien PHC Maghreb « l’utilisation des biotechnologies microbiennes pour la lutte contre la désertification au niveau du Maghreb »

Durée :  2021-2024

Financement obtenu :  19 000,--€ (missions) et 7 000,--€ (fonctionnement) par an

• Co-rédaction et partenaire du projet de maturation « Diversité Génétique de la Réponse du maïs à un champignon Mycorhizien à arbuscules sous bas niveau d’intrants azotés »

Durée :  2021-2023

• Co-Porteur (avec PE Courty) du Projet de collaboration « Etude de la mycorhization du vignoble de Cognac »

- Durée :  2021-2022

• Co-Porteur (avec PE Courty) du projet « Impact de la mycorhization indigène sur la culture de la vigne et la biodiversité du sol », Plan de Relance en partenariat avec la société Mycophyto

- Durée :  2022-2023

• Co-Porteur (avec PE Courty) du projet « Développement d’INdicateurs de la DiversIté fonCtionnellE des Sols viticoles de la région de Cognac : impact des itinéraires techniques » (INDICES) en partenariat avec la société Hennessy

- Durée :  2022-2025

• Porteur du Projet « Identification de marqueurs fonctionnels de l’efficacité de la mycorhize au champ ». Dispositif Itinériare Chercheur Entrepreneur du Conseil Régional de Bourgogne Franche Comté

Durée :  2023-2024

Liens externes  : 

Blog Master B2IPME : https://blog.u-bourgogne.fr/b2ipme/